Human iPSC-derived midbrain organoids are emerging as 3D models to study dopaminergic neuron development and dysfunction in midbrain-associated disorders, including Parkinson’s disease (PD) and related synucleinopathies. In these conditions, phenotypes can manifest as progressive shifts in excitability, network dynamics, and signal propagation, potentially preceding overt neurodegeneration. However, electrophysiological assays for organoids must combine throughput, longitudinal stability, and high spatial resolution to detect subtle functional changes during maturation and in response to compounds with therapeutic potential. Here, we present a reproducible, high-throughput multiscale functional profiling workflow for human iPSC-derived midbrain organoids using High-Density Microelectrode Arrays (HD-MEAs).
In collaboration with STEMCELL Technologies, we plated midbrain organoids at an early functional stage (organoid age ~77 days) onto MaxWell MaxTwo 24-well HD-MEA plates (26,400electrodes/well) and tracked electrophysiological development longitudinally for~1 month. Using the ActivityScan assay, we quantified progressive strengthening of spontaneous activity, including increased firing rate and spike amplitude, consistent with functional maturation. Using the Network assay, organoids showed increasingly organized dynamics, with synchronized bursting emerging and becoming more robust over time, accompanied by increased burst cadence. To establish responsiveness for compound workflows, we applied 4-aminopyridine (4-AP) and tetrodotoxin (TTX), which induced rapid and reproducible bidirectional modulation of firing activity, supporting suitability for pharmacological testing and screening. Furthermore, using our unique AxonTracking assay, we extracted label-free soma-to-axon propagation patterns at the organoid–electrode interface, enabling subcellular-resolution phenotyping complementary to network metrics.
Together, these results demonstrate a scalable HD-MEA workflow for longitudinal, multiscale functional phenotyping of midbrain organoids, supporting assay development and pharmacological perturbation studies in 3D human iPSC-derived models for neurodegenerative disease–relevant phenotyping and screening.